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bpinsard 7bbb4f17f1 Create and publish a Docker image / build-and-push-image (datalad-apptainer) (push) Failing after 10s Details Create and publish a Docker image / build-and-push-image (deface) (push) Failing after 9s Details Create and publish a Docker image / build-and-push-image (dicom_indexer) (push) Failing after 10s Details Create and publish a Docker image / build-and-push-image (heudiconv) (push) Failing after 10s Details new attempt		2024-04-11 15:36:48 -04:00
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README.md

ni-dataops containers

This repo contains builds of containers used in the ci-pipelines To build these, it requires a docker-in-docker runner. Any changes to Dockerfile or folder of a container should trigger a rebuild and push to gitlab registry.

datalad-apptainer

A simple lightweight container (alpine-based) that contains datalad, datalad-containers and apptainer. It's an apptainer-in-docker setup, which avoids caveats of using docker-in-docker (DinD), and allow to use community or custom containers made for rootless HPC usage. That simple env allows notably to run ReproNim bids-app on bids repos but could also run other apptainer images.

datalad-docker

Not currently used, replaced by datalad-apptainer.

heudiconv

Container used for the dicom to BIDS conversion.

deface

Custom defacing

pydeface

Not currently used.