#!/bin/bash export CONTAINER_ID=$(basename $(cat /proc/1/cpuset)) GITLAB_TOKEN_SECRET=$(cat /var/run/secrets/dicom_bot_gitlab_token 2>/dev/null) export GITLAB_TOKEN=${GITLAB_TOKEN_SECRET:=$GITLAB_TOKEN} export GITLAB_API_URL=https://${CI_SERVER_HOST}/api/v4 export GIT_SSH_PORT=${GIT_SSH_PORT:=222} mkdir -p ~/.ssh # only export keys when deploying as a service on swarm # TODO: should try using gitlab runner mechanism if not if [ -n "${GITLAB_TOKEN}" ] ; then # generate container specific ssh-key ssh-keygen -f /root/.ssh/id_rsa -N '' # register it for dicom_bot user echo 'registering the ssh key' export ssh_key_json=$(curl -X POST -F "private_token=${GITLAB_TOKEN}" \ -F "title="${HOSTNAME} -F "key=$(cat ~/.ssh/id_rsa.pub)" \ "${GITLAB_API_URL}/user/keys") export ssh_key_id=$(jq .id <<< "$ssh_key_json") fi git config --global init.defaultBranch main ssh-keyscan -p ${GIT_SSH_PORT} -H ${CI_SERVER_HOST} | install -m 600 /dev/stdin $HOME/.ssh/known_hosts # example # /usr/bin/storescp \ # -aet DICOM_SERVER_SEQUOIA\ # -pm\ # -od $DICOM_TMP_DIR -su ''\ # --eostudy-timeout ${STORESCP_STUDY_TIMEOUT:=60} \ # --exec-on-eostudy "python3 $DICOM_ROOT/exec_on_study_received.py #p " 2100 >> $DICOM_DATA_ROOT/storescp.log # run whatever command was passed (storescp or python index_dicoms directly) $@ if [ -n "${GITLAB_TOKEN}" ] ; then # unregister the temporary ssh key curl -X DELETE -F "private_token=${GITLAB_TOKEN}" "${GITLAB_API_URL}/user/keys/${ssh_key_id}" fi