FROM python:3.12-alpine
RUN apk add --no-cache ca-certificates tzdata 7zip jq\
    git openssh-client git-annex curl bzip2 bash glab\
    && cp /usr/share/zoneinfo/UTC /etc/localtime \
    && apk del tzdata \
    && rm -rf /tmp/* /var/cache/apk/*
RUN apk add --no-cache dcmtk --repository=https://dl-cdn.alpinelinux.org/alpine/edge/testing


RUN pip install --break-system-packages --no-cache-dir datalad ssh_agent_setup python-gitlab pydicom pyyaml

ADD indexer /indexer
COPY entrypoint.sh /entrypoint.sh
RUN chmod +x /entrypoint.sh
ENTRYPOINT ["bash", "/entrypoint.sh"]

WORKDIR /work