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str to pathlib.path correction

This commit is contained in:
Milton Camacho 2024-01-31 19:38:49 +00:00
parent 2375397918
commit c336879fa5
1 changed files with 3 additions and 3 deletions
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6
docker/dicom_indexer/indexer/index_dicom.py
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@ -197,7 +197,7 @@ def export_data(
export_to_s3(dicom_session_ds, output_remote, session_metas) export_to_s3(dicom_session_ds, output_remote, session_metas)
def set_bot_privileges(gitlab_conn: gitlab.Gitlab, gitlab_group_path: str) -> None: def set_bot_privileges(gitlab_conn: gitlab.Gitlab, gitlab_group_path: pathlib.Path) -> None:
# add maint permissions for the dicom bot user on the study repos # add maint permissions for the dicom bot user on the study repos
study_group = get_or_create_gitlab_group(gitlab_conn, gitlab_group_path) study_group = get_or_create_gitlab_group(gitlab_conn, gitlab_group_path)
bot_user = gitlab_conn.users.list(username=GITLAB_BOT_USERNAME) bot_user = gitlab_conn.users.list(username=GITLAB_BOT_USERNAME)
@ -271,8 +271,8 @@ def setup_gitlab_repos(
# initialize BIDS project # initialize BIDS project
init_bids(gitlab_conn, dicom_study_repo, gitlab_group_path) init_bids(gitlab_conn, dicom_study_repo, gitlab_group_path)
# create subgroup for QC and derivatives repos # create subgroup for QC and derivatives repos
get_or_create_gitlab_group(gitlab_conn, f"{gitlab_group_path}/derivatives") get_or_create_gitlab_group(gitlab_conn, gitlab_group_path / "derivatives")
get_or_create_gitlab_group(gitlab_conn, f"{gitlab_group_path}/qc") get_or_create_gitlab_group(gitlab_conn, gitlab_group_path / "qc")
dicom_study_ds.install( dicom_study_ds.install(
source=dicom_session_repo._attrs["ssh_url_to_repo"], source=dicom_session_repo._attrs["ssh_url_to_repo"],