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create BIDS base branch

This commit is contained in:
bpinsard 2024-02-27 14:43:18 -05:00
parent 72ecb4810b
commit be20818528
1 changed files with 7 additions and 4 deletions
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9
docker/dicom_indexer/indexer/index_dicom.py
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@ -27,6 +27,8 @@ GITLAB_TOKEN = os.environ.get("GITLAB_TOKEN", None)
GITLAB_BOT_USERNAME = os.environ.get("GITLAB_BOT_USERNAME", None)
GITLAB_BOT_EMAIL = os.environ.get("GITLAB_BOT_EMAIL", None)
BIDS_DEV_BRANCH = os.environ.get("BIDS_DEV_BRANCH", "dev")
BIDS_BASE_BRANCH = os.environ.get("BIDS_BASE_BRANCH", "base")
BIDS_CONVERT_BRANCHES = os.environ.get("BIDS_CONVERT_BRANCHES", 'convert/*')
NI_DATAOPS_GITLAB_ROOT = os.environ.get("NI_DATAOPS_GITLAB_ROOT", "ni-dataops")
S3_REMOTE_DEFAULT_PARAMETERS = [
@ -335,11 +337,12 @@ def init_bids(
)
bids_project_ds.push(to="origin")
# create dev branch and push for merge requests
bids_project_ds.repo.checkout(BIDS_DEV_BRANCH, ["-b"])
for branch in [BIDS_DEV_BRANCH, BIDS_BASE_BRANCH]:
bids_project_ds.repo.checkout(branch, ["-b"])
bids_project_ds.push(to="origin")
# set protected branches
bids_project_repo.protectedbranches.create(data={"name": "convert/*"})
bids_project_repo.protectedbranches.create(data={"name": "dev"})
for branch in [BIDS_CONVERT_BRANCHES, BIDS_DEV_BRANCH, BIDS_BASE_BRANCH]:
bids_project_repo.protectedbranches.create(data={"name": branch})
### avoid race conditions for first session pushed ###
### otherwise heudiconv starts before the remotes are configured