unf
/
containers
1
0
Fork 0
Code Issues Pull Requests Actions Packages Projects Releases Wiki Activity

create BIDS base branch

This commit is contained in:
bpinsard 2024-02-27 14:43:18 -05:00
parent 72ecb4810b
commit be20818528
1 changed files with 7 additions and 4 deletions
Show Stats Download Patch File Download Diff File Expand all files Collapse all files

11
docker/dicom_indexer/indexer/index_dicom.py
View File

@ -27,6 +27,8 @@ GITLAB_TOKEN = os.environ.get("GITLAB_TOKEN", None)
GITLAB_BOT_USERNAME = os.environ.get("GITLAB_BOT_USERNAME", None) GITLAB_BOT_USERNAME = os.environ.get("GITLAB_BOT_USERNAME", None)
GITLAB_BOT_EMAIL = os.environ.get("GITLAB_BOT_EMAIL", None) GITLAB_BOT_EMAIL = os.environ.get("GITLAB_BOT_EMAIL", None)
BIDS_DEV_BRANCH = os.environ.get("BIDS_DEV_BRANCH", "dev") BIDS_DEV_BRANCH = os.environ.get("BIDS_DEV_BRANCH", "dev")
BIDS_BASE_BRANCH = os.environ.get("BIDS_BASE_BRANCH", "base")
BIDS_CONVERT_BRANCHES = os.environ.get("BIDS_CONVERT_BRANCHES", 'convert/*')
NI_DATAOPS_GITLAB_ROOT = os.environ.get("NI_DATAOPS_GITLAB_ROOT", "ni-dataops") NI_DATAOPS_GITLAB_ROOT = os.environ.get("NI_DATAOPS_GITLAB_ROOT", "ni-dataops")
S3_REMOTE_DEFAULT_PARAMETERS = [ S3_REMOTE_DEFAULT_PARAMETERS = [
@ -335,11 +337,12 @@ def init_bids(
) )
bids_project_ds.push(to="origin") bids_project_ds.push(to="origin")
# create dev branch and push for merge requests # create dev branch and push for merge requests
bids_project_ds.repo.checkout(BIDS_DEV_BRANCH, ["-b"]) for branch in [BIDS_DEV_BRANCH, BIDS_BASE_BRANCH]:
bids_project_ds.push(to="origin") bids_project_ds.repo.checkout(branch, ["-b"])
bids_project_ds.push(to="origin")
# set protected branches # set protected branches
bids_project_repo.protectedbranches.create(data={"name": "convert/*"}) for branch in [BIDS_CONVERT_BRANCHES, BIDS_DEV_BRANCH, BIDS_BASE_BRANCH]:
bids_project_repo.protectedbranches.create(data={"name": "dev"}) bids_project_repo.protectedbranches.create(data={"name": branch})
### avoid race conditions for first session pushed ### ### avoid race conditions for first session pushed ###
### otherwise heudiconv starts before the remotes are configured ### otherwise heudiconv starts before the remotes are configured