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fix a new race condition, init needs qc/derivatives groups

This commit is contained in:
bpinsard 2024-02-14 10:41:43 -05:00
parent 0527fbfd5b
commit 9e4da981f1
1 changed files with 2 additions and 2 deletions
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4
docker/dicom_indexer/indexer/index_dicom.py
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@ -297,11 +297,11 @@ def setup_gitlab_repos(
dicom_study_ds.create(force=True) dicom_study_ds.create(force=True)
# add default study DS structure. # add default study DS structure.
init_dicom_study(dicom_study_ds, gitlab_group_path) init_dicom_study(dicom_study_ds, gitlab_group_path)
# initialize BIDS project
init_bids(gitlab_conn, dicom_study_repo, gitlab_group_path)
# create subgroup for QC and derivatives repos # create subgroup for QC and derivatives repos
get_or_create_gitlab_group(gitlab_conn, gitlab_group_path / "derivatives") get_or_create_gitlab_group(gitlab_conn, gitlab_group_path / "derivatives")
get_or_create_gitlab_group(gitlab_conn, gitlab_group_path / "qc") get_or_create_gitlab_group(gitlab_conn, gitlab_group_path / "qc")
# initialize BIDS project
init_bids(gitlab_conn, dicom_study_repo, gitlab_group_path)
dicom_study_ds.install( dicom_study_ds.install(
source=dicom_session_repo._attrs["ssh_url_to_repo"], source=dicom_session_repo._attrs["ssh_url_to_repo"],