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wip: dicom indexer

This commit is contained in:
bpinsard 2024-01-25 16:38:10 -05:00
parent e5efdba823
commit 84d5a18ba6
1 changed files with 2 additions and 1 deletions
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3
docker/dicom_indexer/indexer/index_dicom.py
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@ -9,6 +9,7 @@ import gitlab
import tempfile import tempfile
import logging import logging
import subprocess import subprocess
import yaml
from contextlib import contextmanager from contextlib import contextmanager
@ -207,7 +208,7 @@ def setup_gitlab_repos(
## add the session to the dicom study repo ## add the session to the dicom study repo
dicom_study_repo = get_or_create_gitlab_project(gitlab_conn, dicom_study_path) dicom_study_repo = get_or_create_gitlab_project(gitlab_conn, dicom_study_path)
with tempfile.TemporaryDirectory() as tmpdir: with tempfile.TemporaryDirectory() as tmpdir:
dicom_study_ds = datalad.api.install( dicom_study_ds = dlad.install(
source=dicom_study_repo._attrs["ssh_url_to_repo"], source=dicom_study_repo._attrs["ssh_url_to_repo"],
path=tmpdir, path=tmpdir,
) )