From 02f07f957394ad33650375d89064901917d7d506 Mon Sep 17 00:00:00 2001
From: bpinsard <basile.pinsard@gmail.com>
Date: Fri, 16 Feb 2024 15:08:06 -0500
Subject: [PATCH] add nidataops config to setup gitattrs

---
 docker/datalad-apptainer/Dockerfile       |  1 +
 docker/datalad-apptainer/cfg_nidataops.py | 45 +++++++++++++++++++++++
 2 files changed, 46 insertions(+)
 create mode 100644 docker/datalad-apptainer/cfg_nidataops.py

diff --git a/docker/datalad-apptainer/Dockerfile b/docker/datalad-apptainer/Dockerfile
index fe14f7d..5b5b923 100644
--- a/docker/datalad-apptainer/Dockerfile
+++ b/docker/datalad-apptainer/Dockerfile
@@ -38,5 +38,6 @@ RUN apk add --no-cache py3-pytest ca-certificates libseccomp squashfs-tools tzda
     && rm -rf /tmp/* /var/cache/apk/*
 
 RUN pip install --break-system-packages --no-cache-dir datalad datalad-container ssh_agent_setup python-gitlab
+ADD cfg_nidataops.py /usr/lib/python3.11/site-packages/datalad/resources/procedures/
 
 WORKDIR /work
diff --git a/docker/datalad-apptainer/cfg_nidataops.py b/docker/datalad-apptainer/cfg_nidataops.py
new file mode 100644
index 0000000..c979011
--- /dev/null
+++ b/docker/datalad-apptainer/cfg_nidataops.py
@@ -0,0 +1,45 @@
+#!/usr/bin/env python3
+"""Procedure to configure Git annex to add text files directly to Git"""
+
+import sys
+import os.path as op
+
+from datalad.distribution.dataset import require_dataset
+
+ds = require_dataset(
+    sys.argv[1],
+    check_installed=True,
+    purpose='configuration')
+
+nthg = {'annex.largefiles': 'nothing'}
+anthg = {'annex.largefiles': 'anything'}
+annex_largefiles = '((mimeencoding=binary)and(largerthan=0))'
+attrs = ds.repo.get_gitattributes('*')
+if not attrs.get('*', {}).get(
+        'annex.largefiles', None) == annex_largefiles:
+    ds.repo.set_gitattributes([
+        ('*', {'annex.largefiles': annex_largefiles}),
+        ('.gitignore', nthg),
+        ('.gitmodules', nthg),
+        ('.gitlab-ci.yml', nthg),
+        ('.all-contributorsrc', nthg),
+        ('.bidsignore', nthg),
+        ('*.json', nthg),
+        ('*.txt', nthg),
+        ('*.tsv', nthg),
+        ('*.nii.gz', anthg),
+        ('*.tgz', anthg),
+        ('*_scans.tsv', anthg),
+        # annex event files as they contain subjects behavioral responses
+        ('sub-*/**/*_events.tsv', anthg),
+        ('*.bk2', anthg),
+        ('*.html', anthg),
+        ('*.svg', anthg),
+        ])
+
+git_attributes_file = op.join(ds.path, '.gitattributes')
+ds.save(
+    git_attributes_file,
+    message="Setup gitattributes for ni-dataops",
+    result_renderer='disabled'
+)