29 lines
854 B
Markdown
29 lines
854 B
Markdown
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# ni-dataops containers
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This repo contains builds of containers used in the ci-pipelines
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To build these, it requires a docker-in-docker runner.
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Any changes to Dockerfile or folder of a container should trigger a rebuild and push to gitlab registry.
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## datalad-apptainer
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A simple lightweight container (alpine-based) that contains datalad, datalad-containers and apptainer.
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It's an apptainer-in-docker setup, which avoids caveats of using docker-in-docker (DinD), and allow to use community or custom containers made for rootless HPC usage.
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That simple env allows notably to run ReproNim bids-app on bids repos but could also run other apptainer images.
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## datalad-docker
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Not currently used, replaced by datalad-apptainer.
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## heudiconv
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Container used for the dicom to BIDS conversion.
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## deface
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Custom defacing
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## pydeface
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Not currently used.
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